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Contract Award Notice

Informatics Service

  • First published: 09 April 2019
  • Last modified: 09 April 2019
  • Version: N/A
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The buyer is not using this website to administer the notice.

To record your interest or obtain additional information or documents please find instructions within the Full Notice Text. (NOTE: Contract Award Notices and Prior Information Notices do not normally require a response)

Contents

Summary

OCID:
Published by:
UK Biobank Limited (UK Biobank)
Authority ID:
AA22157
Publication date:
09 April 2019
Deadline date:
-
Notice type:
Contract Award Notice
Has documents:
No
Has SPD:
No
Has Carbon Reduction Plan:
N/A

Abstract

UK Biobank is seeking to put in place specialist informatics for the Whole Genome Sequencing vanguard phase, by which the sequencing data generated can be appropriately:

— received, reviewed for data and meta-data quality and integrity, and accepted,

— processed to derive sample-level outputs that will maximise utility to the research community, and

— integrated and quality-controlled at the cohort-level to prepare a research-ready dataset (for example, appropriate for genome-wide association analysis or rare-variant burden testing using common tools).

The successful supplier will receive sequencing output, process these data based on the requirements outlined within this technical specification and provide deliverable data back to UK Biobank.

UK Biobank has tendered separately for research data storage services to provide long-term storage, access and distribution of these data to the research community and this is outside the scope of services requested here.

The successful supplier must have experience of and capacity to, supporting projects that involved informatics services at scale.

During the course of service delivery, industry developments and advice from UK Biobank’s WGS Expert Working Group may suggest changes to the file formats used and/or aspects of the pipeline configuration (both minor and major versions changes and/or alternative or additional pipelines). The successful supplier will need to be able to accommodate any such changes (and which would be agreed and implemented through the project’s change control process).

Full notice text

Contract award notice

Results of the procurement procedure

Section I: Contracting entity

I.1) Name and addresses

UK Biobank Ltd

1-2 Spectrum Way, Adswood

Stockport

SK3 0SA

UK

Telephone: +44 1614755386

E-mail: tenders@ukbiobank.ac.uk

NUTS: UKD3

Internet address(es)

Main address: http://www.ukbiobank.ac.uk

Address of the buyer profile: https://www.mytenders.co.uk/search/Search_AuthProfile.aspx?ID=AA25607

I.4) Type of the contracting authority

Body governed by public law

I.5) Main activity

Health

Section II: Object

II.1) Scope of the procurement

II.1.1) Title

Informatics Service

Reference number: UKBB008

II.1.2) Main CPV code

72310000

 

II.1.3) Type of contract

Services

II.1.4) Short description

UK Biobank is issuing this tender to invite bids to supply large-scale, specialist Whole Genome Sequencing (WGS) vanguard informatics, for provision of services for core informatics, sample QA/QC and batch reporting and cohort QA/QC and processing of data to make them research ready, for up to 44 800 genomes.

II.1.6) Information about lots

This contract is divided into lots: No

II.1.7) Total value of the procurement

Value excluding VAT: 1 134 368.00  GBP

II.2) Description

II.2.3) Place of performance

NUTS code:

UKD35

II.2.4) Description of the procurement

UK Biobank is seeking to put in place specialist informatics for the Whole Genome Sequencing vanguard phase, by which the sequencing data generated can be appropriately:

— received, reviewed for data and meta-data quality and integrity, and accepted,

— processed to derive sample-level outputs that will maximise utility to the research community, and

— integrated and quality-controlled at the cohort-level to prepare a research-ready dataset (for example, appropriate for genome-wide association analysis or rare-variant burden testing using common tools).

The successful supplier will receive sequencing output, process these data based on the requirements outlined within this technical specification and provide deliverable data back to UK Biobank.

UK Biobank has tendered separately for research data storage services to provide long-term storage, access and distribution of these data to the research community and this is outside the scope of services requested here.

The successful supplier must have experience of and capacity to, supporting projects that involved informatics services at scale.

During the course of service delivery, industry developments and advice from UK Biobank’s WGS Expert Working Group may suggest changes to the file formats used and/or aspects of the pipeline configuration (both minor and major versions changes and/or alternative or additional pipelines). The successful supplier will need to be able to accommodate any such changes (and which would be agreed and implemented through the project’s change control process).

II.2.5) Award criteria

Quality criterion: Technical requirements / Weighting: 35

Quality criterion: Quality / Weighting: 30

Quality criterion: Cohort-Level QA/QC and research readiness / Weighting: 5

Price / Weighting:  30

II.2.11) Information about options

Options: No

II.2.13) Information about European Union funds

The procurement is related to a project and/or programme financed by European Union funds: No

Section IV: Procedure

IV.1) Description

IV.1.1) Type of procedure

Open procedure

IV.1.8) Information about Government Procurement Agreement (GPA)

The procurement is covered by the Government Procurement Agreement: Yes

IV.2) Administrative information

IV.2.1) Previous publication concerning this procedure

Notice number in the OJ S:

2019/S 020-043469

Section V: Award of contract

A contract/lot is awarded: Yes

V.2 Award of contract

V.2.1) Date of conclusion of the contract

29/03/2019

V.2.2) Information about tenders

Number of tenders received: 7

Number of tenders received from SMEs: 5

Number of tenders received from tenderers from EU Member States: 1

Number of tenders received from tenderers from non-EU Member States: 4

Number of tenders received by electronic means: 7

The contract has been awarded to a group of economic operators: No

V.2.3) Name and address of the contractor

Seven Bridges

529 Main Street, Suite 6601

Charlestown

19002

US

Telephone: +001 2154707643

NUTS: 00

The contractor is an SME: Yes

V.2.4) Information on value of the contract/lot (excluding VAT)

Total value of the contract/lot: : 1 134 368.00  GBP

V.2.5) Information about subcontracting

Section VI: Complementary information

VI.3) Additional information

The full tender documents can be downloaded from www.mytenders.co.uk

Completed bids must be submitted though the www.mytenders.co.uk portal.

Note: To register your interest in this notice and obtain any additional information please visit the myTenders web site at https://www.mytenders.co.uk/Search/Search_Switch.aspx?ID=214265

The buyer has indicated that it will accept electronic responses to this notice via the postbox facility.

A user guide is available at https://www.mytenders.co.uk/sitehelp/help_guides.aspx

Suppliers are advised to allow adequate time for uploading documents and to dispatch the electronic response well in advance of the closing time to avoid any last minute problems.

(MT Ref:215541)

VI.4) Procedures for review

VI.4.1) Review body

UK Biobank Ltd

1-2 Spectrum Way, Adswood

Stockport

SK3 0SA

UK

Telephone: +44 1614755386

Internet address(es)

URL: http://www.ukbiobank.ac.uk

VI.5) Date of dispatch of this notice

04/04/2019

Coding

Commodity categories

ID Title Parent category
72310000 Data-processing services Data services

Delivery locations

ID Description
100 UK - All

Alert region restrictions

The buyer has restricted the alert for this notice to suppliers based in the following regions.

ID Description
There are no alert restrictions for this notice.

About the buyer

Main contact:
tenders@ukbiobank.ac.uk
Admin contact:
N/a
Technical contact:
N/a
Other contact:
N/a

Further information

Date Details
No further information has been uploaded.

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